This class of tRNAs strongly support the utility of our computational analyses as the tRNAAla identity elements have already been perhaps one of the most well characterized to time [13,14]. and eight clades of trypanosomes for tRNACys. (PDF) pntd.0007983.s007.pdf (65K) GUID:?7401EBE5-AE0C-42B8-9C7F-5EC44DDC56D9 S8 Fig: Bubbleplots of CIF divergence between individuals and eight clades of trypanosomes for tRNAMet. (PDF) pntd.0007983.s008.pdf (65K) GUID:?B39F28F8-32A5-433A-A8E0-2970934BAAB3 S9 Fig: Bubbleplots of CIF divergence between individuals and eight clades of trypanosomes for tRNAGlu. (PDF) pntd.0007983.s009.pdf (72K) GUID:?27FB33B7-08E8-49EF-AEF2-D71FC8A246EE S10 Fig: Bubbleplots of CIF divergence between individuals and eight clades of trypanosomes for tRNAGln. (PDF) pntd.0007983.s010.pdf (71K) GUID:?35E28082-8308-455F-A2A8-CED4658B0371 S11 Fig: Bubbleplots of CIF divergence between individuals and eight clades of trypanosomes for tRNATyr. (PDF) pntd.0007983.s011.pdf (65K) GUID:?961F055D-5644-47D6-BD99-14F8BB79AA36 S12 Fig: Bubbleplots of CIF divergence between individuals and eight clades of trypanosomes for tRNATrp. (PDF) pntd.0007983.s012.pdf (65K) GUID:?1B780C96-9AEF-44FA-B701-0480163CB0C2 S13 Fig: Bubbleplots of CIF divergence between individuals and eight clades of trypanosomes for tRNASer. (PDF) pntd.0007983.s013.pdf (80K) GUID:?326B5B41-FC77-414D-B4FA-352DEF9544D3 S14 Fig: Bubbleplots of CIF divergence between individuals and eight clades of trypanosomes for tRNAThr. (PDF) pntd.0007983.s014.pdf (76K) RS 127445 GUID:?9969A8A3-EF4A-4C6D-8315-3371345F6A2F S15 Fig: Bubbleplots of CIF divergence between individuals and eight clades of trypanosomes for tRNAPro. RS 127445 (PDF) pntd.0007983.s015.pdf (76K) GUID:?B300E08F-4F0E-4A21-A62F-E47F7FC93909 S16 Fig: Bubbleplots of CIF divergence between individuals and eight clades of trypanosomes for tRNAHis. (PDF) CR1 pntd.0007983.s016.pdf (69K) GUID:?D027288A-891A-4515-8FA7-745704F3B58B S17 Fig: Bubbleplots of CIF divergence between individuals and eight clades of trypanosomes for tRNAGly. (PDF) pntd.0007983.s017.pdf (80K) GUID:?6910FA5F-D99A-4916-BE8F-8FBDCECFEEF2 S18 Fig: Bubbleplots of CIF divergence between individuals and eight clades of trypanosomes for tRNAAsp. RS 127445 (PDF) pntd.0007983.s018.pdf (65K) GUID:?0C1429CF-1D3E-4BB8-899E-2C2ECE66E9D3 S19 Fig: Bubbleplots of CIF divergence between individuals and eight clades of trypanosomes for tRNAAsn. (PDF) pntd.0007983.s019.pdf (67K) GUID:?1A027825-3EEB-41E4-9F3C-06D057DB57F5 S20 Fig: Bubbleplots of CIF divergence between humans and eight clades of trypanosomes for tRNALys. (PDF) pntd.0007983.s020.pdf (70K) GUID:?6ACC3060-A789-43EB-A326-AB608BE368E0 S21 Fig: Bubbleplots of CIF divergence between individuals and eight clades of trypanosomes RS 127445 for tRNAPhe. (PDF) pntd.0007983.s021.pdf (66K) GUID:?E209BC48-85C3-4D53-A8BE-F8204E13DE76 S22 Fig: Bubbleplots of CIF divergence between individuals and eight clades of trypanosomes for tRNAAla. (PDF) pntd.0007983.s022.pdf (74K) GUID:?20D87E1E-8CD9-4F62-8D36-1DC70965BAE4 S23 Fig: Bubbleplots of CIF divergence between individuals and eight clades of trypanosomes for tRNAiMet. (PDF) pntd.0007983.s023.pdf (65K) GUID:?05555C02-B6F8-4101-AFA5-888240713B55 S24 Fig: Single-site function logos for Adenine in every clades, part I. (PNG) pntd.0007983.s024.png (767K) GUID:?7813C3A2-3E7D-4BFD-9245-EC798D5EC99D S25 Fig: Single-site function logos for Adenine in every clades, part II. (PNG) pntd.0007983.s025.png (784K) GUID:?A1D013C6-5B14-430D-9294-E01C6522A8B6 S26 Fig: Single-site function logos for Uracil in every clades, part I. (PNG) pntd.0007983.s026.png (757K) GUID:?215C2296-2851-4C48-9958-CA23B7DCB4B2 S27 Fig: Single-site function logos for Uracil in every clades, component II. (PNG) pntd.0007983.s027.png (771K) GUID:?64808D49-E036-455B-AB87-1A5BD55F1229 S28 Fig: Single-site function logos for Guanine in every clades, part I. (PNG) pntd.0007983.s028.png (660K) GUID:?0E10525E-0687-41F2-BC62-2B467E114863 S29 Fig: Single-site function logos for Guanine in every clades, part II. (PNG) pntd.0007983.s029.png (668K) GUID:?A4C28D9C-AF6A-4C7E-AF9B-073BD9FA4335 S30 Fig: Single-site function logos for Cytosine in every clades, part I. (PNG) pntd.0007983.s030.png (719K) GUID:?D2AC5ECB-A6E3-4715-9555-60398E0D77FA S31 Fig: Single-site function logos for Cytosine in every clades, part II. (PNG) pntd.0007983.s031.png (726K) GUID:?6069A5ED-A1EC-4E83-B8EA-A47B9DE4AE53 S32 Fig: Paired-site function logos for individuals. (PNG) pntd.0007983.s032.png (504K) GUID:?D582DAAB-3326-4AF6-BCCC-9EBC5AEF41AF S33 Fig: Paired-site function logos for clade. (PNG) pntd.0007983.s033.png (493K) GUID:?8B234760-EA5E-49B8-B6E8-318E06233063 S34 Fig: Paired-site function logos for clade. (PNG) pntd.0007983.s034.png (464K) GUID:?A232BC65-3B71-4A9A-8242-38AF14C0344A S35 Fig: Paired-site function logos for clade. (PNG) pntd.0007983.s035.png (453K) GUID:?CC71BEDA-008B-41B7-9D19-00FA2DBAA8CE S36 Fig: Paired-site function logos for Viannia subclade. (PNG) pntd.0007983.s036.png (466K) GUID:?4B1009E5-0003-4DEB-BB6B-C8EF1AB8F285 S37 Fig: Paired-site function logos for clade. (PNG) pntd.0007983.s037.png (454K) GUID:?E4Compact disc6BC4-4F15-4828-BFAE-86CE2C8291CF S38 Fig: Paired-site function logos for clade. (PNG) pntd.0007983.s038.png (471K) GUID:?85D1775C-8B9B-4EAF-8BE9-BE178C644717 S39 Fig: Paired-site function logos for American clade. (PNG) pntd.0007983.s039.png (477K) GUID:?9B94A520-4AE5-4A04-B818-ADB1EFC65AD6 RS 127445 S40 Fig: Paired-site function logos for African clade. (PNG) pntd.0007983.s040.png (487K) GUID:?F1EE94BB-64C5-4B9B-A0AB-039BF9924904 S41 Fig: UPLC-qTOF bottom top chromatogram of (A) RL12-182-HVF-D Sep-Pak Small fraction C Subfraction 10C9 and (B) extracted ion chromatogram of top 316.28 in dynamic region of track.(PDF) pntd.0007983.s041.pdf (151K) GUID:?06F9234A-8E5E-4894-BB8C-81D5202F7919 S42 Fig: UPLC-qTOF mass spectrum for peak at 316.28 AlaRS aminoacylation. (PDF) pntd.0007983.s045.pdf (39K) GUID:?7F8B9E6D-207B-4D30-8E13-EDFFD26909C5 S1 Desk: Similar and putatively homologous tRNA gene cluster variant sets of duration at least three occurring in at least two genomes. (PDF) pntd.0007983.s046.pdf (20K) GUID:?4341D988-1551-44C8-9407-EE8D34DC97B2 S2 Desk: Equivalent and putatively homologous tRNA gene cluster sets of duration at least 3 occurring in in least two genomes. (PDF) pntd.0007983.s047.pdf (37K) GUID:?E9B69A52-B168-492D-91E1-CE419A87A0AF S3 Desk: Equivalent and putatively homologous tRNA gene cluster sets of duration at least 3 spanning both (L) and (T) genera genomes. Just groupings 1, 3 and 4 include five gene cluster variants conserved in both genera, specifically, ASD, DSA, LXP (two variants), and QLI, where X symbolizes the initiator iMet tRNA gene.(PDF) pntd.0007983.s048.pdf (42K) GUID:?A3097D01-C359-4D77-A681-25932D5405FC S4 Desk: Gene length, structure and useful type statistics in last annotation gene models. (PDF) pntd.0007983.s049.pdf (29K) GUID:?3EA902E9-7B00-4B3A-ADA6-805AC6E30FF9 S5 Table: Nucleotide Composition of TriTryp tRNA Gene-Sets by Individual Genome Assembly, Organized by Clade (alternating background in the region of Table 1, boldface) or.